-----------------------------------------------------------------------------
- Banjo                        Bayesian Network Inference with Java Objects -
- Release 2.2.0                                                 15 Apr 2008 -
- Licensed from Duke University                                             -
- Copyright (c) 2005-08 by Alexander J. Hartemink                           -
- All rights reserved                                                       -
-----------------------------------------------------------------------------
- Project:                                                               50.4
- User:                                                              lsand039
- Dataset:                                  50-vars-377-temporal-observations
- Notes:                                    static bayesian network inference
-----------------------------------------------------------------------------
- Settings file:                                                             
-----------------------------------------------------------------------------
- Input directory:                                 data/release2.0/runA/input
- Observations file:                                                   50.txt
- Observation count:                                                      377
- Number of variables:                                                     51
- Variables are in rows:                                                  yes
- Variable names:                                                      inFile
- Discretization policy:                                                   i7
- Exceptions to the discretization policy:                               none
-----------------------------------------------------------------------------
- Initial structure file:                                                    
- 'Must be present' edges file:                                              
- 'Must not be present' edges file:                                          
- Min. Markov lag:                                                          0
- Max. Markov lag:                                                          0
- Max. parent count:                                                        5
- Equivalent sample size for Dirichlet parameter prior:                   1.0
-----------------------------------------------------------------------------
- Searcher:                                                 SearcherSimAnneal
- Proposer:                                           ProposerRandomLocalMove
- Evaluator:                                        defaulted to EvaluatorBDe
- Decider:                                     defaulted to DeciderMetropolis
-----------------------------------------------------------------------------
- Pre-compute logGamma:                                                    no
- Cache:                                                           fastLevel1
- Cycle checking method:                                   Depth-first Search
-----------------------------------------------------------------------------
- Initial temperature:                                                  25000
- Cooling factor:                                                         0.7
- Reannealing temperature:                                                800
- Max. accepted networks before cooling:                                  250
- Max. proposed networks before cooling:                                25000
- Min. accepted networks before reannealing:                              250
-----------------------------------------------------------------------------
- Output directory:                               data/release2.0/runA/output
- Report file:                      50.4static.report.2016.09.01.20.11.33.txt
- Number of best networks tracked:                                          1
- Max. time:                                                            4.0 h
- Max. restarts:                                                        25000
- Min. networks before checking:                                          250
- Screen reporting interval:                                           10.0 m
- File reporting interval:                                             2.05 h
-----------------------------------------------------------------------------
- Compute influence scores:                                               yes
- Compute consensus graph:                                                yes
- Create consensus graph as HTML:                                         yes
- Create 'dot' output:                                                    yes
- Location of 'dot':  /usr/bin/dot /usr/bin/X11/dot /usr/share/man/man1/dot.1.gz
-----------------------------------------------------------------------------
- XML output directory:                           data/release2.0/runA/output
- XML Report file:                                                           
- XML settings to export:                                                    
- XML parser:                             org.apache.xerces.parsers.SAXParser
- Banjo XML format version:                                               1.0
-----------------------------------------------------------------------------
- Seed for starting search:                                     1472775093553
-----------------------------------------------------------------------------
- Number of threads:                                                        1
-----------------------------------------------------------------------------

Memory info before starting the search: Banjo is using 0 mb of memory
Prep. time used: 537.0 ms
Beginning to search: expect a status report every 10.0 m

Status:  Networks   37790000
         Time       10.0 m (4.1% of max. 4.0 h)
         Re-anneals 400 (1.6% of max. 25000)
         Banjo is using 4 mb of memory

Status:  Networks   71730500
         Time       20.0 m (8.3% of max. 4.0 h)
         Re-anneals 730 (2.9% of max. 25000)
         Banjo is using 4 mb of memory

Status:  Networks   104346500
         Time       30.0 m (12.5% of max. 4.0 h)
         Re-anneals 1024 (4.0% of max. 25000)
         Banjo is using 4 mb of memory

Status:  Networks   137370000
         Time       40.0 m (16.6% of max. 4.0 h)
         Re-anneals 1373 (5.4% of max. 25000)
         Banjo is using 4 mb of memory

Status:  Networks   169981750
         Time       50.0 m (20.8% of max. 4.0 h)
         Re-anneals 1715 (6.8% of max. 25000)
         Banjo is using 4 mb of memory

Status:  Networks   202295250
         Time       1.0 h (25.0% of max. 4.0 h)
         Re-anneals 2050 (8.2% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   235504000
         Time       1.17 h (29.1% of max. 4.0 h)
         Re-anneals 2397 (9.5% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   269088250
         Time       1.33 h (33.3% of max. 4.0 h)
         Re-anneals 2747 (10.9% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   302561000
         Time       1.5 h (37.5% of max. 4.0 h)
         Re-anneals 3093 (12.3% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   336076750
         Time       1.67 h (41.6% of max. 4.0 h)
         Re-anneals 3439 (13.7% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   369321250
         Time       1.83 h (45.8% of max. 4.0 h)
         Re-anneals 3768 (15.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   403050000
         Time       2.0 h (50.0% of max. 4.0 h)
         Re-anneals 4126 (16.5% of max. 25000)
         Banjo is using 5 mb of memory


-----------------------------------------------------------------------------
- Intermediate report                                     Best network so far
-----------------------------------------------------------------------------

Network score: -8229.9845, first found at iteration 251352973
51
 0 2 10 33
 1 2 4 17
 2 2 28 50
 3 3 13 18 27
 4 2 40 50
 5 2 13 29
 6 2 12 14
 7 2 12 20
 8 2 5 40
 9 2 0 40
10 2 14 19
11 2 16 42
12 2 14 39
13 2 14 27
14 0
15 2 17 26
16 3 24 40 44
17 2 28 39
18 1 27
19 2 26 49
20 2 13 28
21 2 6 40
22 3 3 12 36
23 2 6 40
24 1 27
25 2 11 28
26 2 20 28
27 1 14
28 2 3 13
29 2 3 12
30 2 3 13
31 2 13 42
32 2 13 21
33 2 4 13
34 2 17 28
35 2 4 13
36 2 6 46
37 2 28 38
38 2 29 44
39 2 13 30
40 2 26 39
41 2 15 17
42 2 13 23
43 2 16 39
44 3 3 12 14
45 2 21 23
46 2 7 32
47 1 27
48 2 14 17
49 2 13 20
50 2 13 32

-----------------------------------------------------------------------------


Status:  Networks   436559250
         Time       2.17 h (54.1% of max. 4.0 h)
         Re-anneals 4466 (17.8% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   470098000
         Time       2.33 h (58.3% of max. 4.0 h)
         Re-anneals 4812 (19.2% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   504623000
         Time       2.5 h (62.5% of max. 4.0 h)
         Re-anneals 5144 (20.5% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   538109500
         Time       2.67 h (66.6% of max. 4.0 h)
         Re-anneals 5477 (21.9% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   571613500
         Time       2.83 h (70.8% of max. 4.0 h)
         Re-anneals 5836 (23.3% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   604095750
         Time       3.0 h (75.0% of max. 4.0 h)
         Re-anneals 6161 (24.6% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   637501000
         Time       3.17 h (79.1% of max. 4.0 h)
         Re-anneals 6510 (26.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   671740750
         Time       3.33 h (83.3% of max. 4.0 h)
         Re-anneals 6858 (27.4% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   704797750
         Time       3.5 h (87.5% of max. 4.0 h)
         Re-anneals 7205 (28.8% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   739009000
         Time       3.67 h (91.6% of max. 4.0 h)
         Re-anneals 7548 (30.1% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   773639500
         Time       3.83 h (95.8% of max. 4.0 h)
         Re-anneals 7898 (31.5% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   806934250
         Time       4.0 h (100.0% of max. 4.0 h)
         Re-anneals 8248 (32.9% of max. 25000)
         Banjo is using 5 mb of memory



-----------------------------------------------------------------------------
- Final report                                           Best network overall
-----------------------------------------------------------------------------


Network score: -8219.9716, first found at iteration 500092081
51
 0 3 1 9 16
 1 2 4 22
 2 2 28 40
 3 3 13 18 27
 4 2 3 35
 5 2 13 23
 6 2 13 39
 7 2 20 46
 8 2 3 40
 9 2 40 42
10 2 4 13
11 2 13 45
12 4 2 7 22 23
13 2 16 50
14 2 13 21
15 2 17 23
16 2 27 45
17 2 11 48
18 1 27
19 2 13 18
20 2 11 49
21 2 6 40
22 2 25 27
23 2 3 6
24 2 11 27
25 2 3 13
26 2 3 20
27 1 45
28 2 3 23
29 2 17 23
30 2 1 6
31 2 6 42
32 2 45 48
33 2 0 14
34 2 17 28
35 2 6 26
36 2 6 46
37 2 27 38
38 3 0 27 40
39 2 8 13
40 2 13 18
41 2 15 28
42 2 13 23
43 2 16 29
44 2 13 27
45 0
46 3 0 2 13
47 2 13 16
48 2 14 42
49 2 13 14
50 1 27


-----------------------------------------------------------------------------
- Search Statistics                                                          
-----------------------------------------------------------------------------

Statistics collected in searcher 'SearcherSimAnneal':
  Number of networks examined: 806934250
  Total time used: 4.0 h
  High score: -8219.9716, first found at iteration 500092081
  Number of re-anneals: 8248

Statistics collected in proposer 'ProposerRandomLocalMove':
  Additions -- proposed:    268958317
  Deletions -- proposed:    269000407
  Reversals -- proposed:    268975525

Statistics collected in cycle checker 'CycleCheckerCheckThenApply':
  Additions -- considered:  268958317,  acyclic:  192597255
  Deletions -- no cyclicity test necessary
  Reversals -- considered:  268975525,  acyclic:  178752207

Statistics collected in evaluator 'EvaluatorBDe':
  Scores computed:          295753348
  Scores (cache)            placed         fetched        
      with 0 parents:       51             31402135       
      with 1 parents:       2550           390743169      
      with 2 parents:       42925509       20839558       
      with 3 parents:       237102263      76461771       
      with 4 parents:       14749569       3752817        
      with 5 parents:       973406         151930         

Statistics collected in decider 'DeciderMetropolis':
  Additions -- considered:  192597255,  better score:  10696476,  other accepted:  7556877
  Deletions -- considered:  269000407,  better score:  7800338,  other accepted:  10452929
  Reversals -- considered:  178752207,  better score:  12110929,  other accepted:  6403611
  Average permissivity:     0.04

Memory info after completing the search: Banjo is using 5 mb of memory


Network score: -8219.9716, found by thread 1
51
 0 3 1 9 16
 1 2 4 22
 2 2 28 40
 3 3 13 18 27
 4 2 3 35
 5 2 13 23
 6 2 13 39
 7 2 20 46
 8 2 3 40
 9 2 40 42
10 2 4 13
11 2 13 45
12 4 2 7 22 23
13 2 16 50
14 2 13 21
15 2 17 23
16 2 27 45
17 2 11 48
18 1 27
19 2 13 18
20 2 11 49
21 2 6 40
22 2 25 27
23 2 3 6
24 2 11 27
25 2 3 13
26 2 3 20
27 1 45
28 2 3 23
29 2 17 23
30 2 1 6
31 2 6 42
32 2 45 48
33 2 0 14
34 2 17 28
35 2 6 26
36 2 6 46
37 2 27 38
38 3 0 27 40
39 2 8 13
40 2 13 18
41 2 15 28
42 2 13 23
43 2 16 29
44 2 13 27
45 0
46 3 0 2 13
47 2 13 16
48 2 14 42
49 2 13 14
50 1 27

-----------------------------------------------------------------------------
- Post-processing                                            Influence scores
-----------------------------------------------------------------------------

Influence score for  (16,0) ->   (0,0)   .1108
Influence score for   (9,0) ->   (0,0)   .1861
Influence score for   (1,0) ->   (0,0)   -.4339
Influence score for  (22,0) ->   (1,0)   -.3331
Influence score for   (4,0) ->   (1,0)   .3243
Influence score for  (40,0) ->   (2,0)   .0000
Influence score for  (28,0) ->   (2,0)   .4108
Influence score for  (27,0) ->   (3,0)   -.0020
Influence score for  (18,0) ->   (3,0)   .0216
Influence score for  (13,0) ->   (3,0)   .0000
Influence score for  (35,0) ->   (4,0)   .0000
Influence score for   (3,0) ->   (4,0)   .0000
Influence score for  (23,0) ->   (5,0)   .3307
Influence score for  (13,0) ->   (5,0)   .0000
Influence score for  (39,0) ->   (6,0)   .6414
Influence score for  (13,0) ->   (6,0)   .0000
Influence score for  (46,0) ->   (7,0)   .0000
Influence score for  (20,0) ->   (7,0)   .0000
Influence score for  (40,0) ->   (8,0)   -.3331
Influence score for   (3,0) ->   (8,0)   -.3331
Influence score for  (42,0) ->   (9,0)   .3712
Influence score for  (40,0) ->   (9,0)   .0000
Influence score for  (13,0) ->  (10,0)   .1972
Influence score for   (4,0) ->  (10,0)   -.0465
Influence score for  (45,0) ->  (11,0)   .0939
Influence score for  (13,0) ->  (11,0)   .1920
Influence score for  (23,0) ->  (12,0)   .0183
Influence score for  (22,0) ->  (12,0)   .0370
Influence score for   (7,0) ->  (12,0)   -.0185
Influence score for   (2,0) ->  (12,0)   .0552
Influence score for  (50,0) ->  (13,0)   -.4975
Influence score for  (16,0) ->  (13,0)   .0000
Influence score for  (21,0) ->  (14,0)   .1644
Influence score for  (13,0) ->  (14,0)   .3251
Influence score for  (23,0) ->  (15,0)   .0000
Influence score for  (17,0) ->  (15,0)   .3251
Influence score for  (45,0) ->  (16,0)   .0000
Influence score for  (27,0) ->  (16,0)   -.2961
Influence score for  (48,0) ->  (17,0)   .3813
Influence score for  (11,0) ->  (17,0)   .0000
Influence score for  (27,0) ->  (18,0)   .0000
Influence score for  (18,0) ->  (19,0)   .0000
Influence score for  (13,0) ->  (19,0)   .3835
Influence score for  (49,0) ->  (20,0)   .0000
Influence score for  (11,0) ->  (20,0)   .3164
Influence score for  (40,0) ->  (21,0)   .0000
Influence score for   (6,0) ->  (21,0)   .0444
Influence score for  (27,0) ->  (22,0)   .0000
Influence score for  (25,0) ->  (22,0)   .0620
Influence score for   (6,0) ->  (23,0)   .0000
Influence score for   (3,0) ->  (23,0)   .0370
Influence score for  (27,0) ->  (24,0)   .0000
Influence score for  (11,0) ->  (24,0)   .0000
Influence score for  (13,0) ->  (25,0)   .0000
Influence score for   (3,0) ->  (25,0)   .3307
Influence score for  (20,0) ->  (26,0)   .0000
Influence score for   (3,0) ->  (26,0)   .1644
Influence score for  (45,0) ->  (27,0)   .0000
Influence score for  (23,0) ->  (28,0)   .3311
Influence score for   (3,0) ->  (28,0)   .3311
Influence score for  (23,0) ->  (29,0)   .0000
Influence score for  (17,0) ->  (29,0)   .2840
Influence score for   (6,0) ->  (30,0)   .0000
Influence score for   (1,0) ->  (30,0)   .3959
Influence score for  (42,0) ->  (31,0)   .0000
Influence score for   (6,0) ->  (31,0)   .3164
Influence score for  (48,0) ->  (32,0)   .3850
Influence score for  (45,0) ->  (32,0)   .0000
Influence score for  (14,0) ->  (33,0)   .7191
Influence score for   (0,0) ->  (33,0)   .1032
Influence score for  (28,0) ->  (34,0)   .1619
Influence score for  (17,0) ->  (34,0)   .3311
Influence score for  (26,0) ->  (35,0)   -.3331
Influence score for   (6,0) ->  (35,0)   -.1025
Influence score for  (46,0) ->  (36,0)   .3146
Influence score for   (6,0) ->  (36,0)   -.3084
Influence score for  (38,0) ->  (37,0)   -.3331
Influence score for  (27,0) ->  (37,0)   .2475
Influence score for  (40,0) ->  (38,0)   .0000
Influence score for  (27,0) ->  (38,0)   .0000
Influence score for   (0,0) ->  (38,0)   .0727
Influence score for  (13,0) ->  (39,0)   .0000
Influence score for   (8,0) ->  (39,0)   .0000
Influence score for  (18,0) ->  (40,0)   .0000
Influence score for  (13,0) ->  (40,0)   .2168
Influence score for  (28,0) ->  (41,0)   .3103
Influence score for  (15,0) ->  (41,0)   .0000
Influence score for  (23,0) ->  (42,0)   .3307
Influence score for  (13,0) ->  (42,0)   .0000
Influence score for  (29,0) ->  (43,0)   -.3331
Influence score for  (16,0) ->  (43,0)   -.3331
Influence score for  (27,0) ->  (44,0)   .0000
Influence score for  (13,0) ->  (44,0)   .4877
Influence score for  (13,0) ->  (46,0)   .1660
Influence score for   (2,0) ->  (46,0)   .3320
Influence score for   (0,0) ->  (46,0)   .1691
Influence score for  (16,0) ->  (47,0)   .0000
Influence score for  (13,0) ->  (47,0)   -.3270
Influence score for  (42,0) ->  (48,0)   .0000
Influence score for  (14,0) ->  (48,0)   .0000
Influence score for  (14,0) ->  (49,0)   .1641
Influence score for  (13,0) ->  (49,0)   .0000
Influence score for  (27,0) ->  (50,0)   .6153

-----------------------------------------------------------------------------
- Post-processing                                  DOT graphics format output
-----------------------------------------------------------------------------

digraph abstract { 

label = "Banjo Version 2.2.0\nHigh scoring network, score: -8219.9716\nProject: 50.4\nUser: lsand039\nDataset: 50-vars-377-temporal-observations"; 
labeljust="l"; 

    0 [label="Alzheimer"];
    1 [label="GNG4"];
    2 [label="THBS1"];
    3 [label="SIX6"];
    4 [label="GRIK1"];
    5 [label="WWC1"];
    6 [label="KIR2DS3"];
    7 [label="CEACAM6"];
    8 [label="NDUFA7"];
    9 [label="TLR8"];
    10 [label="FAIM3"];
    11 [label="MDFIC"];
    12 [label="GH1"];
    13 [label="REG1B"];
    14 [label="NTRK1"];
    15 [label="PDZD3"];
    16 [label="EDN1"];
    17 [label="ERGIC3"];
    18 [label="S100A2"];
    19 [label="HS3ST1"];
    20 [label="OR12D3"];
    21 [label="BCL3"];
    22 [label="PTGER1"];
    23 [label="LBP"];
    24 [label="MAP3K13"];
    25 [label="LAG3"];
    26 [label="CAMP"];
    27 [label="MLLT1"];
    28 [label="DSG3"];
    29 [label="CYP2C18"];
    30 [label="LPHN2"];
    31 [label="TTC12"];
    32 [label="KANK2"];
    33 [label="KIR2DS5"];
    34 [label="PF4"];
    35 [label="MCF2L2"];
    36 [label="OSBPL1A"];
    37 [label="AP3B2"];
    38 [label="ABCA1"];
    39 [label="SGPL1"];
    40 [label="NTNG1"];
    41 [label="NFE2"];
    42 [label="CABP5"];
    43 [label="NOC2L"];
    44 [label="PTK7"];
    45 [label="CFTR"];
    46 [label="NPY6R"];
    47 [label="SHANK1"];
    48 [label="SNTB2"];
    49 [label="ST8SIA2"];
    50 [label="BMPR2"];

    1->0;
    9->0;
    16->0;
    4->1;
    22->1;
    28->2;
    40->2;
    13->3;
    18->3;
    27->3;
    3->4;
    35->4;
    13->5;
    23->5;
    13->6;
    39->6;
    20->7;
    46->7;
    3->8;
    40->8;
    40->9;
    42->9;
    4->10;
    13->10;
    13->11;
    45->11;
    2->12;
    7->12;
    22->12;
    23->12;
    16->13;
    50->13;
    13->14;
    21->14;
    17->15;
    23->15;
    27->16;
    45->16;
    11->17;
    48->17;
    27->18;
    13->19;
    18->19;
    11->20;
    49->20;
    6->21;
    40->21;
    25->22;
    27->22;
    3->23;
    6->23;
    11->24;
    27->24;
    3->25;
    13->25;
    3->26;
    20->26;
    45->27;
    3->28;
    23->28;
    17->29;
    23->29;
    1->30;
    6->30;
    6->31;
    42->31;
    45->32;
    48->32;
    0->33;
    14->33;
    17->34;
    28->34;
    6->35;
    26->35;
    6->36;
    46->36;
    27->37;
    38->37;
    0->38;
    27->38;
    40->38;
    8->39;
    13->39;
    13->40;
    18->40;
    15->41;
    28->41;
    13->42;
    23->42;
    16->43;
    29->43;
    13->44;
    27->44;
    0->46;
    2->46;
    13->46;
    13->47;
    16->47;
    14->48;
    42->48;
    13->49;
    14->49;
    27->50;
}

